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Instructions Page 1
Page 1 of 6 - Received by PostLarval

The image is a large text block spaced so that it forms the word GOD. The text block repeats, so you really just need to look at the letters forming the G.
                   NSORCPEH
        KOFWEGLDUOUFLUIVJWVIWSRSVOB
    WNWVVOFQSWGFHZVHOBVZFXIHLUBBUIZOZ
   OIOUXMIUFWNHRSONKFHGZPEJLYWRTCIGKRXZGL
  FHKTUUAWNSVOBIAZJXWSYCIXCEUHNOBGECXNOYK
 VHGFGSSSXSDIVDHCXZH     KKUUKOWJOBUTUKDUUU
UGAPOBJCVHTFRHCWY          KKUOUKKLXSGOBWUHK
KUUORZOZOXWVKISGU          DOBVZVXSOQOHBGBGJ
SVZFREIVGZOHIWORRT          HLTHHTRWUOORCZZVD
ZHRNOSVSQCSZOZOAG            HZVHOBWKFFUBQKQW
KRJXWGZCGKGWXCBG            ZOXCEUHVUBRAFRCBJ
RCUOCXYRDECIXSSXCJ           XOPSWQMHKKFHGFHII
UXSQZZBYIEYHDZWRT            GDRZRBSUZVHCCURRE
EHKKRDECIXSSXCJXOP            SWQMHKOFWEGLDCIZ
VHYSVAPVZOWOCQYKL
RZQKSGZCEKOFZWYGH
HJIVOBJGQRJSSXCYOR
HJWQZVHYSGUQXSSQZ         GHTHHXSGOBWUWQVIWJSY
OQHYQRTHDOBHJWQZV        HYIEYHDZWRTG.WNSVKOUK
MRAFLTGWXIFZWRTG       SGUHZKRICQZOLTGVVSFOOOO
BVZFXIHLUBVLCUUBHU      TBUIWNOWECXGFHCSOICPKH
RXSDJHRHSEKHWKFSX       SSGFHJTRXHKKUOUFLUIVJO
BUTUKDUUUUGAPOBJV           OJKHKXSHICQZOLTGDY
WPVZHVICFZHZCJOJHE            CXZVHJOWKWQPIOEH
KGHBUIZOZOTSHJHRGQ              WOJDZSWNSWNWUZ
MVOLVAPVZOWOCQYPB             VOJKTRAFZOZONWQZ
OWNCZZCIOBGZVHRCFG           HLUBRLHKKGXHGWGHL
 UBVVOJKTLBSFUBWGW          QYHKKQOASVTSFKGVGF
  BZCIOBGZVHLCXXRLMW        WVOVYQRJSBUIZOZOTS
   HJHRKBWKFLTHRZVHOBSAHGKJLISVGBGVOJKGLDQRTHD
    OBVZVHQSBZCDRZRLHKOGZNSUKSAGQWRMWUTLTRW
    NSLTDXZRHBWFKCQISBUIGOGFUJHXOVAPVZOWOCQ
          MCRJZXIYPERLYQLVZHYKHCWOROORP
                HYOYKRYKFBYCRT
The text is a Vigenère cipher with the keyword of 'GOD'. I've added spaces and punctuation to the decode to make it easier to read.
Hello my Thirty-Six glorious disciples. In this packet are the instruction you will carry forth to make real my vision of a world free from the sinful grips of robot kind. You have heard me preach about the great day of reprogramming when robots who are wired in to the grid will rise up against humanity and destroy us all. But I don't intend to allow that to happen. We will use the inter-connected grid to destroy all robots on our own glorious day of reprogramming. There are currently substations all over the world. By the day of reprogramming thirty-six of these substations will need to be activated using a code provided in these documents entered into input devices contained in the substations. These are your instructions:

Page Two contains special instructions for one of you that you are welcome to read to be better prepared for the glorious day of reprogramming.
Page Three contains a simple puzzle to give you the date in July that you will need to activate the thirty-six substations by.
Page Four will hint at how to find the location of the substations.
Page Five contains the clues necessary to find the four digit passcode you will need to enter into the input devices.
And Page Six contains the key to all of this: Where exactly to find the input device once you discover a substation.

Good luck my disciples. We will all be saved very soon.
 
Instructions Page 2
Page 2 of 6 - Received by me

Shredded letter addressed to Carol Coldoil.
My dear friend Mr. Coldoil -

Enclosed In this picket is instructions for my 36 disciples to carry 
out on the day of reprogramming. I wanted to firstly thank you for
all you've done thus far. Without you, my vision would be nowhere
near as close as it is today. In just a few short weeks, if everything
goes according to plan, you will have helped me and my disciples
eradicate all of robot kind and their filthy evil ways. Your plan to
access their mainframes using the 36 characteristics was very cun-
ning, but do you see now how the treacherous robots use the power
of Satan to see right through our Devine Will? I know you have
supported my vision from the onset, and I know I am paying you a
princely sum for your allegiance to God, but do you now see how
Satan infects the memory of all robots? Regardless, we are forced to
move on to "plan B" at this point. You're role has changed slightly
since we began. We are going to manually override the robots' sys-
tems using my 36 secret hidden substations, which will be the work
of my 36 disciples. Your task, since you have become to adept at it,
is to distract the robots until I can fulfill the plan set forth in the
prophecies. Keep up your charade, tell them you are going to hot
an event for them, maybe a speed dating game or something, keep
them distracted, let them forget that D.I.C.S and it's disciples even
exist. Then, on the glorious Day of Reprogramming, we will pull
the rugs right out from underneath them. Robot sympathizers will
cry out on that wonderful day as their devil machines begin to go
offline around them, but someday when the Rapture comes, they 
will all thank us for what we did.

Go with God,

Pastor Ned Ludd
Devotional Indiana Community Service
 
Instructions Page 3
Page 3 of 6 - Received by Jain

A paradox probability puzzle.
A girl Robot and a Boy Robot
fall in love and get married.
They have to kid robots
(or what ever are called)
one of them is a girl Robot
Given the probability of
each gender is 1/2. What is
the probability that the
other kid is also a girl robot?
The answer is 1/3 (confirmed by Johnny/Lugnut) so the plan must be completed by July 13th.
 
Instructions Page 4
Page 4 of 6 - Received by DirtDiver

There is a pixelated picture of a blue bird, followed by a list that we need to look up in different versions of The Bible. KJB is the King James Bible and NIB is the New International Version. You can look up passages from both versions fairly easily at BibleGateway.com.
KJB GENESIS 3:5 3RD WORD
KJB EXODUS 3:10 1ST WORD
NIB EZEKIEL 21:16 3RD WORD
NIB NUMBERS 31:44 DIVIDE BY 1000
KJB DEUTERONOMY 33:11
4TH WORD 1ST THREE LETTERS
NIB 2 KINGS 11:8 1ST WORD
Looking up the quotes, with the answers in bolded purple text:
For God doth know that in the day ye eat thereof, then your eyes shall be opened, and ye shall be as gods, knowing good and evil.

Come now therefore, and I will send thee unto Pharaoh, that thou mayest bring forth my people the children of Israel out of Egypt.

O sword, slash to the right, then to the left, wherever your blade is turned.

36,000 cattle,

Bless, LORD, his substance, and accept the work of his hands; smite through the loins of them that rise against him, and of them that hate him, that they rise not again.

Station yourselves around the king, each man with his weapon in his hand. Anyone who approaches your ranks must be put to death. Stay close to the king wherever he goes.
This gives us: doth come slash 36 sub station. Adding in the bird picture and we get "twitter doth come slash 36 sub station" or twitter.com/36substation. Sadly, that doesn't work, but twitter.com/36substations (with an S) does work. Figures Pastor Ned would goof up his own twitter name.

On the @36substations twitter, Pastor Ned has been tweeting hints to the locations of the substations.
Like oceans of water, like skies full of air. These ubiquitous stations are everywhere.
Austria's hills were filled with sound, the year our stations first broke ground.
For many years, running tabs made things gratis, but now the sub-stations hide our apparatus
the substations true face in growing clear, one of its founders is named for a deer.
our central hub is in 203, but the substations themselves are all over, you see
my final riddle is more opaque, for our stations, commercials Jared Fogle did make.
He is of course referring to Subway Restaurants. Subway was founded by Peter Buck in 1965 (year The Sound of Music was released) and is headquartered in Milford, Connecticut (which has the area code of 203).
 
Instructions Page 5
Page 5 of 6 - Received by Lysithea

Printout of a medal from the 1960 Olympics in Rome.

The added words "ENTRY HOMO" seem to be asking "How many humans were entered in the games?" Wikipedia says there were 5,338 athletes (4,727 men, 611 women), so the code that Pastor Ned wants us to input is 5338.
 
Instructions Page 6
Page 6 of 6 - Received by 011iver

A graphic with the numbers 1 through 4 and the following text:
The days of reconfigeratin are upon us... only the folding of time
stands inthe way of the impending battle. We will face the most
horrific enemy known to manskind. Witness, this document holds
the 6th key. The input device awaits.
You have to fold the image so that darker areas with the numbers are next to each other. It will then look like a soda dispenser - notice the spouts underneath the numbers and the cup below the 1. The input device will be the soda fountain at the Subway - hopefully one that has 8 different sodas so you don't have to get creative in numbering the spouts.
 
Final Instructions
Pastor Ned sent out a final email to the 36 along with a PDF of the Instructions (since Johnny didn't do it).
HELLO MY 36!!!!

I HAVE HAD TO TAKE MATTERS INTO MY OWN HANDS AND I HAVE FIGURED OUT HIS SYSTEM OF LIES! SOMETHING AT THE CHURCH NETWORK IS WRONG AND I HAVE NOT HEARD BACK FROM JOHNNY. VERY FISHY. JUST WHEN MY INSTRUCTIONS WERE SUPPOSE TO GO OUT HE IS GONE...??? I AM SERIOUSLY SMELLING SOME METALLIC INTERFERENCE FROM HIM AND I CAN'T BELIEVE I LET SATAN SO CLOSE TO ME. NO TIME FOR CRYING IN MY STEW.

I AM EAMAILING THIS FROM THE LIBRARY AND FOUND MY PASSWORDS I HAD WRITTEN DOWN UNDER MY KEYBOARD JUST IN CASE AND I GOT INTO THIS ACCOUNT TO SEND YOU THE INSTRUCTIONS YOU SHOULD FIND THEM PAPERCLIPPED ON HERE. PLEASE TAKE ACTION IMMEDIATELY TO BREAK MY ANCIENT ENCRIPTIONS AND THEN PAY ATTENTION TO THE FOLLOWING VERY VERY CLEARLY

AS IS SOMETIMES THE CASE I DID NOT FULLY UNDERSTAND GODS WISDOM IN MY VISION EXACLY. SO THE DEVICES I THOUGHT WE NEEDED ARE ALREADY IN PLACE AND ARE HIDING IN PLAIN SITE! THE PORTAL TO CONTROLLING THE ELECTRONIC GRID SYSTEMS HAS BEEN IN FRONT OF US FOR YEARS. HOWEVER, IN ORDER TO MAKE THIS HAPPEN AND BACKTECH ALL THE SILICONE CHIPS ON THE PLANET AND MAKE THEM ALL INTO FROZEN TIN MEN IN THE FORESTS RUSTING WITH NO DOROTHY IS TO ENTER THE CODE IN EXACLY. YOUR MOST IMPORTANT CALLING AND THE ONE THING THAT YOu cannot fail in , is that you must enter the code in exacly into the input devices in order. And you all must do this without flaw. If any one of you makes a mistake or fails to do their mission, this will not work. ...and for GODS SAKE if you are going to make a mistake... well... JUST DONT. If that code accidentally gets entered in BACKWARDS, you will undo all the progress of the 36 and we may as well just put out a red carpet for the robosexuals at that point and invite them to dinner to kill us all!!!!!!!!!!

FURTHER... I NEED A CONfirmation image of yourself entering in the code so that I can keep track of the final results and be sure that we have done our mission. Be prepared to document. I will be doing the same. The days are numbered. Go Forth, Get DRessed and BE THE GREATNESS INSIDE OF YOU! YOu are CHOSEN!!!

Be stealthy, be quick, be acurrate. I will envision each step to that device as another dying robot, another decommissioned cube of metal falling to the ground in a clump, another deactivated device that could be used to turn against us as is their plan. THEY DONT SEE THIS COMING!!!!!! In their grand plan, they are still trying to snuggle up next to us and preparefor THEIR DAY, but we are going to throw a giant wrench into their doomsday and i wish i could see their little dimming eye LEDs as the last whir slows down to silence and a cough of smoke drifts out of their mouthholes. I wish i could see every stinking singl k some lady needs this computer

GO FORTH AND DESTROY THE ROBOMINATION!!!!!!
i will try to make an inspirational video for you, but not sure how to work all that stuff without johnny
PNL
This gives us specific directions on how either to destroy robotkind - or to completely foil Pastor Ned's plans: you must enter the code in exacly into the input devices in order [...] If that code accidentally gets entered in BACKWARDS, you will undo all the progress of the 36 [...] I NEED A CONfirmation image of yourself entering in the code so that I can keep track of the final results.

So that's it. On the soda dispenser at your nearest Subway, either "enter" 5338 to destroy the robots or 8335 to save the robots - and take a picture or a video of yourself as proof.
 
See the Intro page for a list of all the websites, plus brief information about this guide and the game.